STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ75324.1Methyl-accepting chemotaxis protein. (1256 aa)    
Predicted Functional Partners:
SHK48785.1
Multi-sensor hybrid histidine kinase.
 
 0.998
SHJ46743.1
GAF domain-containing protein.
  
 0.996
SHJ69974.1
Signal transduction histidine kinase.
 
 0.995
SHJ53193.1
Signal transduction histidine kinase.
  
 0.994
SHK05015.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.994
SHK50662.1
PAS domain S-box-containing protein.
  
 0.987
SHK87623.1
Signal transduction histidine kinase.
 
 0.986
SHK97732.1
PAS domain S-box-containing protein.
 
 0.986
SHK16908.1
PAS domain S-box-containing protein.
   
 0.968
SHK97836.1
PAS domain S-box-containing protein.
 
 0.968
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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