STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ49437.1Glycosyltransferase involved in cell wall bisynthesis. (733 aa)    
Predicted Functional Partners:
SHJ49406.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
 
     0.952
SHK02146.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.673
SHJ49373.1
MerR HTH family regulatory protein.
 
     0.646
SHJ49469.1
Hypothetical protein.
       0.636
SHJ49505.1
SpoIIAA-like.
       0.636
SHJ49335.1
Curved DNA-binding protein.
       0.572
SHJ79562.1
1,4-alpha-glucan branching enzyme.
   
  0.523
SHJ64449.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
   
  0.523
SHK97229.1
Glycogen recognition site of AMP-activated protein kinase.
   
  0.523
SHJ49299.1
Protease FtsH subunit HflC /SPFH domain, Band 7 family protein.
       0.407
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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