SHJ53262.1 protein (Reichenbachiella agariperforans)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

Your Input:

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Score

SHJ53262.1

Por secretion system C-terminal sorting domain-containing protein. (935 aa)

Predicted Functional Partners:

SHJ53360.1

0.738

SHJ79083.1

0.718

SHJ66037.1

0.718

SHK15564.1

0.718

SHJ53226.1

0.700

SHJ53296.1

0.592

SHJ74300.1

0.568

SHJ57131.1

0.558

SHJ53334.1

0.537

SHJ41679.1

0.507

Your Current Organism:

Reichenbachiella agariperforans

NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHJ41679.1	SHJ53262.1	SAMN04488028_10143	SAMN04488028_101423	Serine protease, subtilisin family.	Por secretion system C-terminal sorting domain-containing protein.	0.507
SHJ41679.1	SHJ53360.1	SAMN04488028_10143	SAMN04488028_101426	Serine protease, subtilisin family.	Starch-binding associating with outer membrane.	0.679
SHJ41679.1	SHJ74300.1	SAMN04488028_10143	SAMN04488028_1011084	Serine protease, subtilisin family.	Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.507
SHJ53226.1	SHJ53262.1	SAMN04488028_101422	SAMN04488028_101423	Y_Y_Y domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.700
SHJ53226.1	SHJ53296.1	SAMN04488028_101422	SAMN04488028_101424	Y_Y_Y domain-containing protein.	Alpha/beta hydrolase family protein.	0.467
SHJ53226.1	SHJ53334.1	SAMN04488028_101422	SAMN04488028_101425	Y_Y_Y domain-containing protein.	TonB-linked outer membrane protein, SusC/RagA family.	0.644
SHJ53226.1	SHJ53360.1	SAMN04488028_101422	SAMN04488028_101426	Y_Y_Y domain-containing protein.	Starch-binding associating with outer membrane.	0.692
SHJ53262.1	SHJ41679.1	SAMN04488028_101423	SAMN04488028_10143	Por secretion system C-terminal sorting domain-containing protein.	Serine protease, subtilisin family.	0.507
SHJ53262.1	SHJ53226.1	SAMN04488028_101423	SAMN04488028_101422	Por secretion system C-terminal sorting domain-containing protein.	Y_Y_Y domain-containing protein.	0.700
SHJ53262.1	SHJ53296.1	SAMN04488028_101423	SAMN04488028_101424	Por secretion system C-terminal sorting domain-containing protein.	Alpha/beta hydrolase family protein.	0.592
SHJ53262.1	SHJ53334.1	SAMN04488028_101423	SAMN04488028_101425	Por secretion system C-terminal sorting domain-containing protein.	TonB-linked outer membrane protein, SusC/RagA family.	0.537
SHJ53262.1	SHJ53360.1	SAMN04488028_101423	SAMN04488028_101426	Por secretion system C-terminal sorting domain-containing protein.	Starch-binding associating with outer membrane.	0.738
SHJ53262.1	SHJ57131.1	SAMN04488028_101423	SAMN04488028_101540	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.558
SHJ53262.1	SHJ66037.1	SAMN04488028_101423	SAMN04488028_101818	Por secretion system C-terminal sorting domain-containing protein.	Protein of unknown function, DUF255.	0.718
SHJ53262.1	SHJ74300.1	SAMN04488028_101423	SAMN04488028_1011084	Por secretion system C-terminal sorting domain-containing protein.	Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.568
SHJ53262.1	SHJ79083.1	SAMN04488028_101423	SAMN04488028_1011249	Por secretion system C-terminal sorting domain-containing protein.	Thioredoxin-like domain-containing protein.	0.718
SHJ53262.1	SHK15564.1	SAMN04488028_101423	SAMN04488028_103181	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.718
SHJ53296.1	SHJ53226.1	SAMN04488028_101424	SAMN04488028_101422	Alpha/beta hydrolase family protein.	Y_Y_Y domain-containing protein.	0.467
SHJ53296.1	SHJ53262.1	SAMN04488028_101424	SAMN04488028_101423	Alpha/beta hydrolase family protein.	Por secretion system C-terminal sorting domain-containing protein.	0.592
SHJ53334.1	SHJ53226.1	SAMN04488028_101425	SAMN04488028_101422	TonB-linked outer membrane protein, SusC/RagA family.	Y_Y_Y domain-containing protein.	0.644

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Network Stats

number of nodes:

7

number of edges:

12

average node degree:

3.43

avg. local clustering coefficient:

0.795

expected number of edges:

6

PPI enrichment p-value:

0.0245

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046933

Proton-transporting ATP synthase activity, rotational mechanism

11 of 17

2.59

11.22

6.40e-25

GO:0046961

Proton-transporting ATPase activity, rotational mechanism

2 of 5

2.38

1.38

0.0028

GO:0005524

ATP binding

5 of 481

0.8

0.49

0.0253

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045259

Proton-transporting ATP synthase complex

11 of 17

2.59

11.48

1.35e-25

GO:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

6 of 10

2.56

6.26

3.31e-13

GO:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

5 of 7

2.63

5.43

3.04e-11

GO:0031676

Plasma membrane-derived thylakoid membrane

11 of 123

1.73

4.67

8.61e-18

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1123

Proton channel activity

11 of 18

2.57

10.94

1.75e-24

CL:1125

ATP synthesis

10 of 13

2.67

10.51

1.91e-22

CL:1126

ATP synthesis

6 of 7

2.71

6.17

1.31e-12

CL:1139

ATP synthesis

4 of 6

2.6

3.61

1.46e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00195

Photosynthesis

11 of 80

1.92

5.98

2.32e-19

map00190

Oxidative phosphorylation

11 of 88

1.88

5.72

3.09e-19

map01100

Metabolic pathways

11 of 2083

0.5

0.43

0.00014

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0045259

Proton-transporting ATP synthase complex

11 of 18

2.57

11.19

3.96e-25

GOCC:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

6 of 10

2.56

5.87

2.41e-12

GOCC:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

5 of 8

2.58

4.92

2.85e-10

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0066

ATP synthesis

11 of 16

2.62

11.63

1.10e-25

KW-0375

Hydrogen ion transport

11 of 19

2.54

11.16

2.29e-25

KW-0139

CF(1)

6 of 9

2.6

6.16

7.38e-13

KW-0138

CF(0)

5 of 7

2.63

5.17

1.10e-10

KW-0793

Thylakoid

11 of 108

1.79

5.07

2.21e-18

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00430

ATP synthase B/B CF(0)

3 of 3

2.78

2.32

5.65e-05

PF00231

ATP synthase

2 of 2

2.78

1.22

0.0062

PF02874

ATP synthase alpha/beta family, beta-barrel domain

2 of 4

2.48

1.08

0.0104

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