STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ93655.1Ammonium transporter, Amt family. (427 aa)    
Predicted Functional Partners:
SHJ47351.1
PAS domain S-box-containing protein.
 
 
 0.737
SHK48785.1
Multi-sensor hybrid histidine kinase.
 
  
 0.732
SHK56808.1
Glutamate synthase (NADPH/NADH) large chain.
 
  
 0.723
SHK05015.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  
 0.634
SHJ46743.1
GAF domain-containing protein.
    
 0.618
SHJ93630.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
 
     0.597
SHK97836.1
PAS domain S-box-containing protein.
 
  
 0.507
SHJ69974.1
Signal transduction histidine kinase.
 
  
 0.505
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
   
 0.485
SHJ53193.1
Signal transduction histidine kinase.
 
  
 0.456
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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