STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ95274.1NfeD-like C-terminal, partner-binding. (172 aa)    
Predicted Functional Partners:
SHJ95234.1
Uncharacterized protein YqfA, UPF0365 family.
 
    0.984
SHK46854.1
Membrane-bound serine protease (ClpP class).
  
     0.742
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.644
SHK80899.1
OmpA family protein.
  
     0.556
SHK58264.1
Hypothetical protein.
  
     0.555
SHJ95370.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
 
     0.474
SHJ95083.1
Two component transcriptional regulator, LuxR family.
       0.452
SHJ95118.1
Signal transduction histidine kinase.
       0.452
SHJ95154.1
Hypothetical protein.
       0.452
SHJ95185.1
Hypothetical protein.
       0.452
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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