STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK03576.1Transglutaminase-like enzyme, putative cysteine protease. (641 aa)    
Predicted Functional Partners:
SHK03611.1
Protein of unknown function.
 
     0.954
SHJ90188.1
Protein of unknown function.
 
     0.781
SHK03639.1
Hypothetical protein.
       0.524
SHJ91548.1
BlaR1 peptidase M56.
  
     0.492
SHK35915.1
Protein of unknown function.
  
     0.461
SHJ64449.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
  
     0.453
SHK27667.1
Protein of unknown function.
  
     0.437
SHK11846.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.435
SHK56747.1
Capsule assembly protein Wzi.
  
     0.429
SHJ57486.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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