STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK14831.1PKD domain-containing protein. (549 aa)    
Predicted Functional Partners:
SHK81245.1
Cytochrome c.
  
  
  0.698
SHK14869.1
Hypothetical protein.
       0.689
SHK58596.1
PKD repeat-containing protein.
  
     0.675
SHJ45179.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.672
SHK67380.1
Hypothetical protein.
  
     0.625
SHK14910.1
Starch-binding associating with outer membrane.
       0.610
SHK14931.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.580
SHK38191.1
Cytochrome c.
  
  
  0.525
SHK14800.1
Uncharacterized lipoprotein YddW, UPF0748 family.
       0.496
SHK81560.1
TonB-dependent Receptor Plug Domain.
  
     0.480
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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