STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK15421.1Protein of unknown function. (226 aa)    
Predicted Functional Partners:
SHK47171.1
Hypothetical protein.
    
 0.901
SHJ74057.1
Cytochrome P450.
    
 0.813
SHK70008.1
Hypothetical protein; Belongs to the cytochrome P450 family.
    
 0.813
SHJ55522.1
Beta-carotene 3-hydroxylase.
   
 0.805
SHJ92091.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.805
SHK73340.1
Fatty acid hydroxylase superfamily protein.
   
 0.805
SHK91277.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.805
SHK19771.1
Hypothetical protein.
 
     0.800
SHK49642.1
Hypothetical protein.
 
     0.794
SHJ78206.1
Protein of unknown function DUF58.
 
    0.784
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.