STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK18573.1TRAP transporter, DctM subunit. (430 aa)    
Predicted Functional Partners:
SHK18542.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.997
SHK18513.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.968
SHK88080.1
Myxalamid-type polyketide synthase MxaB.
     
 0.813
SHK80104.1
[acyl-carrier-protein] S-malonyltransferase.
  
 
  0.485
SHK03667.1
3-hydroxybutyryl-CoA dehydratase.
     
 0.484
SHK59176.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.479
SHK18425.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.478
accD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
    
  0.474
uxaC
D-glucuronate isomerase.
  
    0.473
SHJ66464.1
hydroxymethylglutaryl-CoA lyase.
 
  
  0.440
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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