STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK11818.1Protein of unknown function. (503 aa)    
Predicted Functional Partners:
SHK11846.1
Outer membrane protein beta-barrel domain-containing protein.
 
     0.852
SHK11874.1
Protein of unknown function.
 
     0.666
SHK51715.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.533
SHK02435.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.516
SHK15897.1
Outer membrane protein assembly factor BamA.
  
     0.498
SHJ45977.1
Hypothetical protein.
  
     0.486
SHK15928.1
Family of unknown function.
  
     0.448
SHJ60369.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.418
SHK76405.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.409
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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