STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK35273.1poly(beta-D-mannuronate) lyase. (773 aa)    
Predicted Functional Partners:
SHK35562.1
Alginate lyase.
 
  
  0.890
SHK35487.1
MFS transporter, ACS family, hexuronate transporter.
 
    0.794
SHK35637.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
     0.767
SHK35447.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.750
SHK35527.1
Cupin domain-containing protein.
 
     0.703
SHK18067.1
Pectate lyase superfamily protein.
  
 
  0.690
SHK35298.1
Por secretion system C-terminal sorting domain-containing protein.
 
    
0.670
SHJ91521.1
Cupin domain protein.
 
     0.568
SHK18102.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
  0.542
SHJ41679.1
Serine protease, subtilisin family.
    
 0.508
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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