STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK38191.1Cytochrome c. (1007 aa)    
Predicted Functional Partners:
SHK14087.1
Hypothetical protein.
  
  0.984
SHK68440.1
Type 1 glutamine amidotransferase (GATase1).
 
     0.941
SHK68078.1
Hypothetical protein.
 
  
 
0.925
SHK67911.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
 
 0.916
SHK81245.1
Cytochrome c.
 
  
 
0.910
SHK38157.1
Sugar phosphate isomerase/epimerase.
 
     0.855
SHK90407.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
 
0.763
SHJ43661.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.753
SHK04331.1
Cyanate permease.
  
     0.645
SHK68216.1
Planctomycete cytochrome C.
 
 
 0.642
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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