STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK46879.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
SHK46906.1
LysM repeat-containing protein.
       0.816
SHK46932.1
TIGR02757 family protein.
       0.792
SHK46854.1
Membrane-bound serine protease (ClpP class).
       0.600
SHK46787.1
Hypothetical protein.
       0.548
SHK46827.1
SnoaL-like domain-containing protein.
       0.548
SHK46674.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
       0.433
SHK46701.1
Hypothetical protein.
       0.433
SHK46726.1
LVIVD repeat-containing protein.
       0.433
SHK46757.1
Hypothetical protein.
       0.433
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.