STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK46554.1Leucine-rich repeat (LRR) protein. (807 aa)    
Predicted Functional Partners:
SHK46522.1
Hypothetical protein.
       0.800
SHK46491.1
Hypothetical protein.
       0.798
SHK16595.1
Hypothetical protein.
  
     0.764
SHK46466.1
Hypothetical protein.
       0.715
SHK60259.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.685
SHJ94786.1
Oxygen tolerance.
  
     0.611
SHK47070.1
Hypothetical protein.
  
     0.604
SHJ64976.1
Tetratricopeptide repeat-containing protein.
  
     0.568
SHK59367.1
Hypothetical protein.
  
     0.561
SHK17707.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.554
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.