STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK73100.1Outer membrane protein beta-barrel domain-containing protein. (250 aa)    
Predicted Functional Partners:
SHJ73425.1
Cytochrome c nitrite reductase small subunit.
  
   0.670
SHK60988.1
Outer membrane protein.
    
 
 0.629
SHK61025.1
Periplasmic chaperone for outer membrane proteins Skp.
    
 
 0.629
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
    
 
 0.580
SHJ45104.1
WD40-like Beta Propeller Repeat.
   
 
 0.567
SHJ40542.1
WD40-like Beta Propeller Repeat.
   
 
 0.567
SHJ93987.1
WD40-like Beta Propeller Repeat.
   
 
 0.567
SHJ98195.1
OmpA family protein.
   
 
 0.567
SHK27894.1
WD40-like Beta Propeller Repeat.
   
 
 0.567
SHK65540.1
WD40-like Beta Propeller Repeat.
   
 
 0.567
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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