STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK75600.1Protein of unknown function. (408 aa)    
Predicted Functional Partners:
SHK75767.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.985
SHK75570.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.970
SHK75827.1
Lysophospholipase L1.
 
  
  0.871
SHK75723.1
Pectinesterase.
 
     0.854
SHK75699.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.844
SHK75794.1
Hypothetical protein.
 
     0.805
SHK75631.1
Acetyl esterase/lipase.
 
     0.800
SHJ41709.1
Lysophospholipase L1.
 
  
  0.770
SHK73733.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
     0.751
SHK75886.1
Starch-binding associating with outer membrane.
 
     0.638
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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