STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK79972.13-oxoacid CoA-transferase subunit B. (217 aa)    
Predicted Functional Partners:
SHK79997.1
3-oxoacid CoA-transferase subunit A.
 0.999
SHK03494.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.956
SHK27474.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.861
SHJ66464.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.846
SHJ52316.1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.840
SHK03556.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.813
SHK80032.1
Homogentisate 1,2-dioxygenase.
  
  
 0.810
SHK79941.1
Fumarylacetoacetate hydrolase.
  
  
 0.645
SHK59176.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.617
SHK79908.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.610
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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