STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK90497.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
SHK90574.1
Protein of unknown function.
 
     0.831
SHK90536.1
Galactose oxidase, central domain.
 
     0.813
SHK30666.1
Protein of unknown function.
 
     0.767
SHK13736.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.711
SHK59493.1
Hypothetical protein.
  
     0.688
SHK61025.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.685
SHJ78612.1
Protein of unknown function.
  
     0.684
SHJ65715.1
Protein of unknown function.
  
     0.673
SHK51136.1
Membrane protein YfhO.
 
     0.664
SHK74041.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.644
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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