STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK95968.1Penicillin-binding protein 1A. (760 aa)    
Predicted Functional Partners:
SHK96004.1
Hypothetical protein.
       0.798
SHK60720.1
Penicillin-binding protein 2.
  
 
 
 0.789
SHJ71565.1
Cell division protein FtsI (penicillin-binding protein 3).
  
 
 
 0.781
SHK96040.1
Peptidase family M23.
 
   
 0.768
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.766
SHK60758.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
   
 0.717
SHK45324.1
Penicillin-binding protein 1A.
  
  
 
0.699
SHK00709.1
Penicillin-binding protein 1C.
  
  
0.696
SHJ71448.1
Cell division protein FtsW; Belongs to the SEDS family.
  
   
 0.649
SHJ42557.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.639
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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