STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK98198.1Type IX secretion system membrane protein, PorP/SprF family. (490 aa)    
Predicted Functional Partners:
SHK98167.1
Gliding motility-associated C-terminal domain-containing protein.
   
  0.787
SHK98267.1
Hypothetical protein.
  
 
  0.786
SHK98228.1
Hypothetical protein.
       0.773
SHK98299.1
Hypothetical protein.
       0.773
SHK27894.1
WD40-like Beta Propeller Repeat.
 
 
0.678
SHJ45104.1
WD40-like Beta Propeller Repeat.
  
0.611
SHJ40542.1
WD40-like Beta Propeller Repeat.
  
 
0.611
SHJ98195.1
OmpA family protein.
  
0.608
SHK46906.1
LysM repeat-containing protein.
 
 
 0.605
SHJ43661.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.582
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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