STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK98267.1Hypothetical protein. (1333 aa)    
Predicted Functional Partners:
SHK98228.1
Hypothetical protein.
 
     0.953
SHK98167.1
Gliding motility-associated C-terminal domain-containing protein.
 
 
  0.891
SHK62252.1
Hypothetical protein.
 
 
  0.849
SHK98198.1
Type IX secretion system membrane protein, PorP/SprF family.
  
 
  0.786
SHK62226.1
Hypothetical protein.
 
     0.784
SHK98299.1
Hypothetical protein.
       0.773
SHK92960.1
ATP/ADP translocase.
 
     0.754
SHK83431.1
Hypothetical protein.
  
 
  0.691
SHJ47080.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
  0.690
SHK93028.1
WD40 repeat.
  
     0.658
Your Current Organism:
Reichenbachiella agariperforans
NCBI taxonomy Id: 156994
Other names: DSM 26134, JCM 11238, KMM 3525, NBRC 16625, R. agariperforans, Reichenbachia agariperforans, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Reichenbachiella agariperforans (Nedashkovskaya et al. 2003) Nedashkovskaya et al. 2005 emend. Cha et al. 2011
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