TRE_LOCUS6732 protein (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRE_LOCUS6732

Uncharacterized protein. (154 aa)

Predicted Functional Partners:

TRE_LOCUS1281

0.572

TRE_LOCUS1945

0.572

TRE_LOCUS6339

0.572

TRE_LOCUS7374

0.572

A0A183W9A9

0.572

TRE_LOCUS10430

0.572

TRE_LOCUS12230

0.572

TRE_LOCUS17583

0.572

TRE_LOCUS19882

0.572

TRE_LOCUS113

0.562

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183W9A9	TRE_LOCUS113	A0A183W9A9	A0A183VJC9	Uncharacterized protein.	Glyco_trans_2-like domain-containing protein.	0.435
A0A183W9A9	TRE_LOCUS6732	A0A183W9A9	A0A183W1X7	Uncharacterized protein.	Uncharacterized protein.	0.572
TRE_LOCUS10430	TRE_LOCUS113	A0A183WE77	A0A183VJC9	Amidohydro-rel domain-containing protein.	Glyco_trans_2-like domain-containing protein.	0.435
TRE_LOCUS10430	TRE_LOCUS6732	A0A183WE77	A0A183W1X7	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.572
TRE_LOCUS10430	TRE_LOCUS7374	A0A183WE77	A0A183W4K1	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.833
TRE_LOCUS113	A0A183W9A9	A0A183VJC9	A0A183W9A9	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS10430	A0A183VJC9	A0A183WE77	Glyco_trans_2-like domain-containing protein.	Amidohydro-rel domain-containing protein.	0.435
TRE_LOCUS113	TRE_LOCUS12230	A0A183VJC9	A0A183WJC7	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS1281	A0A183VJC9	A0A183VIT4	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS17583	A0A183VJC9	A0A183WZM9	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS1945	A0A183VJC9	A0A183VN89	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS19882	A0A183VJC9	A0A183X679	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS6339	A0A183VJC9	A0A183W0T3	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS113	TRE_LOCUS6732	A0A183VJC9	A0A183W1X7	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.562
TRE_LOCUS113	TRE_LOCUS7374	A0A183VJC9	A0A183W4K1	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.435
TRE_LOCUS12230	TRE_LOCUS113	A0A183WJC7	A0A183VJC9	Uncharacterized protein.	Glyco_trans_2-like domain-containing protein.	0.435
TRE_LOCUS12230	TRE_LOCUS17583	A0A183WJC7	A0A183WZM9	Uncharacterized protein.	Uncharacterized protein.	0.895
TRE_LOCUS12230	TRE_LOCUS1945	A0A183WJC7	A0A183VN89	Uncharacterized protein.	Uncharacterized protein.	0.695
TRE_LOCUS12230	TRE_LOCUS6732	A0A183WJC7	A0A183W1X7	Uncharacterized protein.	Uncharacterized protein.	0.572
TRE_LOCUS1281	TRE_LOCUS113	A0A183VIT4	A0A183VJC9	Uncharacterized protein.	Glyco_trans_2-like domain-containing protein.	0.435