STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRE_LOCUS7568RBR-type E3 ubiquitin transferase. (453 aa)    
Predicted Functional Partners:
A0A183WNL3
AN1-type domain-containing protein.
   
 0.903
TRE_LOCUS17264
Ubiquitin-like domain-containing protein.
   
 0.903
TRE_LOCUS19726
Ubiquitin-like domain-containing protein.
    
 0.898
TRE_LOCUS13333
Ubiquitin-like domain-containing protein.
    
  0.889
TRE_LOCUS12381
Ubiquitin-like domain-containing protein.
    
 0.836
TRE_LOCUS7044
Uncharacterized protein.
    
 0.835
TRE_LOCUS11113
Uncharacterized protein.
    
 0.835
A0A183WE11
Uncharacterized protein.
    
 0.826
TRE_LOCUS13380
Uncharacterized protein.
    
 0.826
A0A183WRC1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.826
Your Current Organism:
Trichobilharzia regenti
NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.