STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRE_LOCUS14040Uncharacterized protein. (161 aa)    
Predicted Functional Partners:
TRE_LOCUS2872
Small nuclear ribonucleoprotein Sm D2.
   
 0.966
A0A183X3S2
Uncharacterized protein.
   
 0.965
TRE_LOCUS11905
Small nuclear ribonucleoprotein G.
   
 0.963
TRE_LOCUS630
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.961
TRE_LOCUS669
Sm domain-containing protein.
   
 0.961
TRE_LOCUS3438
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.959
TRE_LOCUS12491
Sm domain-containing protein.
    
 0.956
TRE_LOCUS14978
RRM domain-containing protein.
   
 0.951
TRE_LOCUS19601
RRM domain-containing protein.
   
 0.927
TRE_LOCUS21645
Nuclear cap-binding protein subunit 2.
    
 0.926
Your Current Organism:
Trichobilharzia regenti
NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.