TRE_LOCUS19883 protein (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRE_LOCUS19883

Uncharacterized protein. (298 aa)

Predicted Functional Partners:

A0A183XA66

0.567

A0A183VPJ2

0.482

TRE_LOCUS4375

0.471

A0A183WJF5

0.429

TRE_LOCUS8030

0.424

TRE_LOCUS7874

0.420

TRE_LOCUS4796

0.413

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VPJ2	A0A183XA66	A0A183VPJ2	A0A183XA66	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A183VPJ2	TRE_LOCUS19883	A0A183VPJ2	A0A183X681	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A183WJF5	A0A183XA66	A0A183WJF5	A0A183XA66	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.493
A0A183WJF5	TRE_LOCUS19883	A0A183WJF5	A0A183X681	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.429
A0A183WJF5	TRE_LOCUS4375	A0A183WJF5	A0A183VV68	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.527
A0A183WJF5	TRE_LOCUS4796	A0A183WJF5	A0A183VWE0	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.476
A0A183WJF5	TRE_LOCUS8030	A0A183WJF5	A0A183W746	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.626
A0A183XA66	A0A183VPJ2	A0A183XA66	A0A183VPJ2	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A183XA66	A0A183WJF5	A0A183XA66	A0A183WJF5	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.493
A0A183XA66	TRE_LOCUS19883	A0A183XA66	A0A183X681	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A183XA66	TRE_LOCUS4375	A0A183XA66	A0A183VV68	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A183XA66	TRE_LOCUS4796	A0A183XA66	A0A183VWE0	Uncharacterized protein.	Uncharacterized protein.	0.573
TRE_LOCUS19883	A0A183VPJ2	A0A183X681	A0A183VPJ2	Uncharacterized protein.	Uncharacterized protein.	0.482
TRE_LOCUS19883	A0A183WJF5	A0A183X681	A0A183WJF5	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.429
TRE_LOCUS19883	A0A183XA66	A0A183X681	A0A183XA66	Uncharacterized protein.	Uncharacterized protein.	0.567
TRE_LOCUS19883	TRE_LOCUS4375	A0A183X681	A0A183VV68	Uncharacterized protein.	Uncharacterized protein.	0.471
TRE_LOCUS19883	TRE_LOCUS4796	A0A183X681	A0A183VWE0	Uncharacterized protein.	Uncharacterized protein.	0.413
TRE_LOCUS19883	TRE_LOCUS7874	A0A183X681	A0A183W6I9	Uncharacterized protein.	Uncharacterized protein.	0.420
TRE_LOCUS19883	TRE_LOCUS8030	A0A183X681	A0A183W746	Uncharacterized protein.	Uncharacterized protein.	0.424
TRE_LOCUS4375	A0A183WJF5	A0A183VV68	A0A183WJF5	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.527