STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRE_LOCUS21444DNA_LIGASE_A3 domain-containing protein. (101 aa)    
Predicted Functional Partners:
TRE_LOCUS14871
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.985
A0A183WJP0
XPGI domain-containing protein.
  
 0.967
TRE_LOCUS14666
XPGN domain-containing protein.
  
 0.967
A0A183W2X4
AAA domain-containing protein.
   
 0.926
A0A183VYN4
Ku domain-containing protein.
   
 0.915
TRE_LOCUS12726
Ku_PK_bind domain-containing protein.
   
 0.915
TRE_LOCUS2019
Uncharacterized protein.
   
 0.877
TRE_LOCUS8225
BRCT domain-containing protein.
   
 0.877
TRE_LOCUS18344
XRCC1_N domain-containing protein.
   
 0.877
TRE_LOCUS5988
Uncharacterized protein.
  
 0.850
Your Current Organism:
Trichobilharzia regenti
NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome
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