STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ79498.1ATP-binding cassette, subfamily B, multidrug efflux pump. (576 aa)    
Predicted Functional Partners:
SDZ79522.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
0.988
pstB
Phosphate transport system ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.841
SDZ79546.1
Hypothetical protein.
  
    0.751
SEA30927.1
ATP-binding cassette, subfamily B.
 
0.717
SEA30124.1
ATP-binding cassette, subfamily B.
 
0.716
SEA64178.1
ATP-binding cassette, subfamily B.
 
0.716
SDZ90545.1
ATP-binding cassette, subfamily B.
 
0.707
SEA64148.1
ATP-binding cassette, subfamily B.
 
0.707
SEA88432.1
ATP-binding cassette, subfamily B.
 
0.704
SDZ90576.1
ATP-binding cassette, subfamily B.
 
0.693
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.