STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ86787.1ATP-binding cassette, subfamily B. (574 aa)    
Predicted Functional Partners:
SDZ90545.1
ATP-binding cassette, subfamily B.
 
  
 
0.891
SEA88992.1
Hypothetical protein.
  
 0.715
SEA30150.1
ATP-binding cassette, subfamily B.
 
0.704
SEA30891.1
ATP-binding cassette, subfamily B.
 
0.700
SDZ79498.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
0.689
SEA30687.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
   
 0.534
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.529
SEA65058.1
ATP-grasp domain-containing protein.
   
 0.514
SDZ86815.1
Hypothetical protein.
       0.505
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.492
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.