STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA47949.1Two-component system, OmpR family, KDP operon response regulator KdpE. (235 aa)    
Predicted Functional Partners:
SEA47926.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 
 0.995
SDZ84219.1
Two-component system, OmpR family, sensor histidine kinase ResE.
 0.968
SEA75896.1
PAS/PAC sensor signal transduction histidine kinase.
 0.962
SEA91004.1
Signal transduction histidine kinase.
 0.902
SEA74680.1
Two-component system, OmpR family, sensor kinase.
 0.883
SEA50165.1
Flagellar motor switch protein FliN/FliY.
   
 0.881
SEA43362.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.878
SEA97377.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.875
kdpC
K+-transporting ATPase ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.
 
  
 0.866
SDZ89525.1
uroporphyrin-III C-methyltransferase.
    
 0.860
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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