STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA63644.1Uncharacterized OsmC-related protein. (151 aa)    
Predicted Functional Partners:
SDZ89149.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.868
SDZ79979.1
Dihydrolipoamide dehydrogenase.
 
  
 0.512
SDZ82198.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
  0.483
SDZ79959.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
  0.447
SEA16168.1
NADPH-glutathione reductase.
    
 0.445
SDZ79929.1
Pyruvate dehydrogenase E1 component beta subunit.
    
  0.431
SEA63626.1
Hypothetical protein.
       0.425
pdhA
Pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
    
  0.424
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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