STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA75986.1Predicted O-methyltransferase YrrM. (242 aa)    
Predicted Functional Partners:
SDZ82198.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.877
SEA29275.1
Collagenase-like protease, PrtC family.
 
  
 0.850
SEA29231.1
Putative protease.
 
  
 0.809
SEA76011.1
Putative hemolysin.
 
     0.721
tdk
Thymidine kinase.
  
 
  0.699
SEA80634.1
Long-chain acyl-CoA synthetase.
   
 0.679
SEA20358.1
Deoxyadenosine/deoxycytidine kinase.
  
 
  0.649
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.644
metK-2
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.644
udk
Uridine kinase.
  
 
  0.641
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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