STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA73997.1Hypothetical protein. (51 aa)    
Predicted Functional Partners:
SEA74023.1
Alcohol dehydrogenase, class IV.
       0.461
metE
Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
       0.446
SEA73939.1
5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family.
       0.424
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
       0.422
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
       0.405
SEA74098.1
Rhamnulokinase.
       0.405
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.