STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA90982.1Putative membrane protein. (64 aa)    
Predicted Functional Partners:
SEA49041.1
Hypothetical protein.
  
     0.686
SEA98500.1
Hypothetical protein.
  
     0.669
SEA89562.1
Hypothetical protein.
  
     0.654
SEA89228.1
Putative membrane protein.
  
     0.529
SEA76354.1
SMI1 / KNR4 family (SUKH-1).
  
     0.513
SEA87995.1
Hypothetical protein.
  
     0.492
SEA97950.1
Putative membrane protein.
  
     0.489
SEA90962.1
Cu2+-exporting ATPase.
       0.486
SDZ80614.1
Energy-coupled thiamine transporter ThiT.
  
     0.430
SEA76432.1
Bacteriocin transport accessory protein, putative.
  
     0.426
Your Current Organism:
Trichococcus collinsii
NCBI taxonomy Id: 157076
Other names: ATCC BAA-296, DSM 14526, T. collinsii, Trichococcus collinsii Liu et al. 2002 emend. Pikuta et al. 2006, strain 37AN3, strain 37AN3*
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.