STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARF16686.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)    
Predicted Functional Partners:
ARF16054.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.804
ARF18043.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.804
ARF18627.1
Cytochrome C oxidase Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.732
ARF16434.1
Exonuclease sbcCD subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.729
ARF16788.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.729
ARF18626.1
Cytochrome b6; Electron transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.717
ARF17058.1
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.714
ARF18172.1
Sodium-independent anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.714
ARF18510.1
3-ketoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
ARF16205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.697
Your Current Organism:
Sporosarcina ureae
NCBI taxonomy Id: 1571
Other names: ATCC 6473, DSM 2281, IFO 12699, JCM 2577, LMG 17366, LMG:17366, NBRC 12699, Planosarcina ureae, S. ureae, Sarcina ureae, VKM B-595
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.