STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARF17493.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)    
Predicted Functional Partners:
ARF17492.1
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.978
ARF17494.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.870
ARF17491.1
Replicative DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.824
ARF17486.1
Metallohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.581
ARF17548.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.571
ARF17489.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.565
polC
PolC-type DNA polymerase III; Catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
ARF18364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
ARF17553.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
ARF17495.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
Your Current Organism:
Sporosarcina ureae
NCBI taxonomy Id: 1571
Other names: ATCC 6473, DSM 2281, IFO 12699, JCM 2577, LMG 17366, LMG:17366, NBRC 12699, Planosarcina ureae, S. ureae, Sarcina ureae, VKM B-595
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.