STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CI238_01789Srp40 domain-containing protein. (452 aa)    
Predicted Functional Partners:
CI238_05428
Nosic domain-containing protein.
   
 
 0.978
CI238_04547
Nosic domain-containing protein.
   
 
 0.976
CI238_02542
rRNA 2-O-methyltransferase fibrillarin.
   
 
 0.956
CI238_07980
Family pseudouridylate synthase.
   
 
 0.928
CI238_01354
Electron transfer flavoprotein alpha-subunit.
   
   0.893
CI238_04952
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.879
CI238_02588
Cbf mak21 family protein.
   
   0.879
CI238_07594
Nol1 nop2 sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.870
CI238_08152
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.866
CI238_09521
Nucleolar gtp-binding protein 2.
   
 
 0.863
Your Current Organism:
Colletotrichum incanum
NCBI taxonomy Id: 1573173
Other names: BPI 884116, C. incanum, CBS 133485, Colletotrichum incanum H.-C. Yang, J. S. Haudenshield, & G. L. Hartman, 2014, Colletotrichum sp. HCY-2012, IL6A, IL:6A, NRRL 62592
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.