STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CI238_08738Set domain-containing protein. (1329 aa)    
Predicted Functional Partners:
CI238_05701
Wd domain-containing protein.
    
 0.999
CI238_06073
Histone acetyltransferase type b subunit 2.
    
 0.984
CI238_05868
Uncharacterized protein.
    
 0.947
CI238_02040
Histone demethylase jarid1.
    
 0.947
CI238_07478
Histone H2A; Belongs to the histone H2A family.
    
 0.920
CI238_00874
Cytosine-specific methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 0.914
CI238_08657
Grf zinc finger domain-containing protein.
    
 0.902
CI238_06222
Tat pathway signal sequence.
    
 0.902
CI238_10964
Fun14 family protein.
    
 0.902
CI238_07477
Histone H2B; Belongs to the histone H2B family.
   
 0.882
Your Current Organism:
Colletotrichum incanum
NCBI taxonomy Id: 1573173
Other names: BPI 884116, C. incanum, CBS 133485, Colletotrichum incanum H.-C. Yang, J. S. Haudenshield, & G. L. Hartman, 2014, Colletotrichum sp. HCY-2012, IL6A, IL:6A, NRRL 62592
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.