STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CI238_03881Histone deacetylase complex subunit sap30. (181 aa)    
Predicted Functional Partners:
CI238_07671
Dna-directed rna polymerases i.
   
 0.999
CI238_04952
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
CI238_04413
DNA-dependent RNA polymerase I subunit A43.
   
 0.999
CI238_00995
A49-like rna polymerase i associated factor.
   
 0.999
CI238_00274
Dna-directed rna polymerase i and iii 14 kDa polypeptide.
  
 0.999
CI238_08218
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.999
CI238_00416
Rna polymerase rpb3 insert domain-containing protein.
   
 0.999
CI238_07195
Dna-directed rna polymerases i ii iii subunit 10.
   
 0.999
CI238_09699
Metallothionein-i gene transcription activator.
   
 0.999
CI238_08152
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
Your Current Organism:
Colletotrichum incanum
NCBI taxonomy Id: 1573173
Other names: BPI 884116, C. incanum, CBS 133485, Colletotrichum incanum H.-C. Yang, J. S. Haudenshield, & G. L. Hartman, 2014, Colletotrichum sp. HCY-2012, IL6A, IL:6A, NRRL 62592
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.