STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CI238_13295Zinc knuckle. (453 aa)    
Predicted Functional Partners:
CI238_09825
60s ribosomal protein l21.
   
   0.582
CI238_05719
Forms a complex with the other rrn protein rrn6 and rrn11.
    
  0.553
CI238_09052
Ankyrin repeat protein nuc-2.
    
  0.549
CI238_07312
Glycerophosphoryl diester phosphodiesterase.
    
  0.547
CI238_03551
60s ribosomal protein l16; Belongs to the universal ribosomal protein uL13 family.
   
   0.546
CI238_09251
50s ribosomal protein l2.
   
 
 0.512
CI238_04538
Dna repair protein rad32; Belongs to the MRE11/RAD32 family.
    
  0.502
CI238_06408
Mitochondrial import receptor subunit tom-40.
    
  0.498
CI238_00280
60s ribosomal protein l2.
   
 
 0.495
CI238_09584
50s ribosomal protein l13; Belongs to the universal ribosomal protein uL13 family.
   
   0.494
Your Current Organism:
Colletotrichum incanum
NCBI taxonomy Id: 1573173
Other names: BPI 884116, C. incanum, CBS 133485, Colletotrichum incanum H.-C. Yang, J. S. Haudenshield, & G. L. Hartman, 2014, Colletotrichum sp. HCY-2012, IL6A, IL:6A, NRRL 62592
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.