Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FFIC_140370 | FFIC_140410 | GCA_001047075_00373 | GCA_001047075_00377 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.759 |
FFIC_140370 | FFIC_231110 | GCA_001047075_00373 | GCA_001047075_00546 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein. | 0.911 |
FFIC_140370 | polA | GCA_001047075_00373 | GCA_001047075_01397 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.917 |
FFIC_140410 | FFIC_140370 | GCA_001047075_00377 | GCA_001047075_00373 | Unannotated protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.759 |
FFIC_140410 | FFIC_231110 | GCA_001047075_00377 | GCA_001047075_00546 | Unannotated protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Unannotated protein. | 0.591 |
FFIC_140410 | polA | GCA_001047075_00377 | GCA_001047075_01397 | Unannotated protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.702 |
FFIC_231080 | FFIC_231100 | GCA_001047075_00543 | GCA_001047075_00545 | Unannotated protein. | Unannotated protein. | 0.785 |
FFIC_231080 | FFIC_231110 | GCA_001047075_00543 | GCA_001047075_00546 | Unannotated protein. | Unannotated protein. | 0.781 |
FFIC_231080 | FFIC_231130 | GCA_001047075_00543 | GCA_001047075_00548 | Unannotated protein. | Unannotated protein. | 0.556 |
FFIC_231080 | coaE | GCA_001047075_00543 | GCA_001047075_00544 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.785 |
FFIC_231080 | mutM | GCA_001047075_00543 | GCA_001047075_00542 | Unannotated protein. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.586 |
FFIC_231080 | yibE | GCA_001047075_00543 | GCA_001047075_00547 | Unannotated protein. | Unannotated protein. | 0.556 |
FFIC_231100 | FFIC_231080 | GCA_001047075_00545 | GCA_001047075_00543 | Unannotated protein. | Unannotated protein. | 0.785 |
FFIC_231100 | FFIC_231110 | GCA_001047075_00545 | GCA_001047075_00546 | Unannotated protein. | Unannotated protein. | 0.933 |
FFIC_231100 | FFIC_231130 | GCA_001047075_00545 | GCA_001047075_00548 | Unannotated protein. | Unannotated protein. | 0.603 |
FFIC_231100 | FFIC_281970 | GCA_001047075_00545 | GCA_001047075_01092 | Unannotated protein. | Unannotated protein. | 0.707 |
FFIC_231100 | coaE | GCA_001047075_00545 | GCA_001047075_00544 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.837 |
FFIC_231100 | mutM | GCA_001047075_00545 | GCA_001047075_00542 | Unannotated protein. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.761 |
FFIC_231100 | polA | GCA_001047075_00545 | GCA_001047075_01397 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.657 |
FFIC_231100 | yibE | GCA_001047075_00545 | GCA_001047075_00547 | Unannotated protein. | Unannotated protein. | 0.603 |
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