Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FFIC_241520 | FFIC_241530 | GCA_001047075_00791 | GCA_001047075_00792 | Unannotated protein. | Unannotated protein; Adenine glycosylase active on G-A mispairs. | 0.788 |
FFIC_241520 | FFIC_241540 | GCA_001047075_00791 | GCA_001047075_00793 | Unannotated protein. | Unannotated protein. | 0.546 |
FFIC_241520 | polA | GCA_001047075_00791 | GCA_001047075_01397 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.486 |
FFIC_241530 | FFIC_241520 | GCA_001047075_00792 | GCA_001047075_00791 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein. | 0.788 |
FFIC_241530 | FFIC_241540 | GCA_001047075_00792 | GCA_001047075_00793 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein. | 0.546 |
FFIC_241530 | FFIC_281100 | GCA_001047075_00792 | GCA_001047075_01016 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein. | 0.781 |
FFIC_241530 | FFIC_281850 | GCA_001047075_00792 | GCA_001047075_01081 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein. | 0.411 |
FFIC_241530 | dnaN | GCA_001047075_00792 | GCA_001047075_00049 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.680 |
FFIC_241530 | mutM | GCA_001047075_00792 | GCA_001047075_00542 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.477 |
FFIC_241530 | polA | GCA_001047075_00792 | GCA_001047075_01397 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.804 |
FFIC_241530 | xth | GCA_001047075_00792 | GCA_001047075_00960 | Unannotated protein; Adenine glycosylase active on G-A mispairs. | Unannotated protein. | 0.947 |
FFIC_241540 | FFIC_241520 | GCA_001047075_00793 | GCA_001047075_00791 | Unannotated protein. | Unannotated protein. | 0.546 |
FFIC_241540 | FFIC_241530 | GCA_001047075_00793 | GCA_001047075_00792 | Unannotated protein. | Unannotated protein; Adenine glycosylase active on G-A mispairs. | 0.546 |
FFIC_281100 | FFIC_241530 | GCA_001047075_01016 | GCA_001047075_00792 | Unannotated protein. | Unannotated protein; Adenine glycosylase active on G-A mispairs. | 0.781 |
FFIC_281100 | FFIC_281850 | GCA_001047075_01016 | GCA_001047075_01081 | Unannotated protein. | Unannotated protein. | 0.876 |
FFIC_281100 | dnaN | GCA_001047075_01016 | GCA_001047075_00049 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.705 |
FFIC_281100 | mutM | GCA_001047075_01016 | GCA_001047075_00542 | Unannotated protein. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.667 |
FFIC_281100 | polA | GCA_001047075_01016 | GCA_001047075_01397 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.878 |
FFIC_281100 | xth | GCA_001047075_01016 | GCA_001047075_00960 | Unannotated protein. | Unannotated protein. | 0.531 |
FFIC_281850 | FFIC_241530 | GCA_001047075_01081 | GCA_001047075_00792 | Unannotated protein. | Unannotated protein; Adenine glycosylase active on G-A mispairs. | 0.411 |
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