STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI05374.1Squalene-associated FAD-dependent desaturase. (473 aa)    
Predicted Functional Partners:
SFI44037.1
Phytoene synthase.
  
 0.984
SFJ18002.1
Squalene synthase HpnC.
  
 0.883
SFH95298.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
   
 0.647
SFI39031.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
    0.609
SFH70020.1
Phytoene dehydrogenase-related protein.
    
 0.459
SFI24314.1
Phytoene dehydrogenase-related protein.
    
 0.459
SFI05357.1
Hypothetical protein.
       0.429
SFJ31808.1
2-polyprenyl-6-methoxyphenol hydroxylase.
     
 0.425
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
     0.417
SFI91645.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
   
 0.409
Your Current Organism:
Planctomicrobium piriforme
NCBI taxonomy Id: 1576369
Other names: DSM 26348, P. piriforme, Planctomicrobium piriforme Kulichevskaya et al. 2015, Planctomycetaceae bacterium P3, VKM B-2887, strain P3
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