STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI25163.1Predicted metal-dependent hydrolase, TIM-barrel fold. (395 aa)    
Predicted Functional Partners:
SFI25192.1
Hypothetical protein.
       0.697
SFI25133.1
Protein of unknown function.
       0.664
SFJ01394.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.601
SFH80268.1
Hypothetical protein.
  
     0.571
SFH93423.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
     0.541
SFH84213.1
Threonine dehydrogenase.
 
 
  0.535
SFI10794.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.513
SFH69169.1
Sugar phosphate isomerase/epimerase.
  
     0.501
SFI82156.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.485
SFI23697.1
Repeat domain-containing protein.
  
     0.476
Your Current Organism:
Planctomicrobium piriforme
NCBI taxonomy Id: 1576369
Other names: DSM 26348, P. piriforme, Planctomicrobium piriforme Kulichevskaya et al. 2015, Planctomycetaceae bacterium P3, VKM B-2887, strain P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.