STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI38698.1Squalene-hopene/tetraprenyl-beta-curcumene cyclase. (586 aa)    
Predicted Functional Partners:
SFH95298.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
  
  
 
0.926
SFH56574.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
  
  
  0.917
SFI38726.1
Geranylgeranyl pyrophosphate synthase.
 
  
 0.894
SFI39031.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
   
 0.790
SFJ08243.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.764
SFI59408.1
Hypothetical protein.
  
     0.757
SFI75714.1
Hypothetical protein.
  
     0.757
SFJ36070.1
PQQ-like domain-containing protein.
  
     0.757
SFI57543.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.755
SFI63384.1
Outer membrane protein assembly factor BamB.
  
     0.755
Your Current Organism:
Planctomicrobium piriforme
NCBI taxonomy Id: 1576369
Other names: DSM 26348, P. piriforme, Planctomicrobium piriforme Kulichevskaya et al. 2015, Planctomycetaceae bacterium P3, VKM B-2887, strain P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.