STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI87086.1CubicO group peptidase, beta-lactamase class C family. (391 aa)    
Predicted Functional Partners:
SFI87143.1
Hypothetical protein.
       0.773
SFJ42162.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.771
SFI68031.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.612
SFI87254.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.593
SFI87187.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
       0.548
SFJ42062.1
RHS repeat-associated core domain-containing protein.
  
     0.502
SFH86385.1
Fucose 4-O-acetylase.
  
     0.455
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.431
Your Current Organism:
Planctomicrobium piriforme
NCBI taxonomy Id: 1576369
Other names: DSM 26348, P. piriforme, Planctomicrobium piriforme Kulichevskaya et al. 2015, Planctomycetaceae bacterium P3, VKM B-2887, strain P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.