STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ55625.1Rhamnogalacturonyl hydrolase YesR. (570 aa)    
Predicted Functional Partners:
SFI27475.1
Prolyl oligopeptidase family protein.
  
  
  0.639
SFH74921.1
Major Facilitator Superfamily protein.
  
     0.634
SFJ55591.1
Hypothetical protein.
       0.623
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.595
SFJ08128.1
Hypothetical protein.
 
     0.563
SFI01121.1
Sialate O-acetylesterase.
  
     0.544
SFH57240.1
Calcineurin-like phosphoesterase.
  
     0.542
SFJ38769.1
Hypothetical protein.
  
     0.522
SFH74774.1
Uncharacterized iron-regulated membrane protein.
  
     0.514
SFI27600.1
Peptide/nickel transport system substrate-binding protein.
  
     0.505
Your Current Organism:
Planctomicrobium piriforme
NCBI taxonomy Id: 1576369
Other names: DSM 26348, P. piriforme, Planctomicrobium piriforme Kulichevskaya et al. 2015, Planctomycetaceae bacterium P3, VKM B-2887, strain P3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.