Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABCE2 | UPF1 | A0A371HEA5 | A0A371FTA7 | ABC transporter E family member 2. | Regulator of nonsense transcripts 1-like protein. | 0.613 |
ABCE2 | nxt3 | A0A371HEA5 | A0A371ES29 | ABC transporter E family member 2. | Nxt3. | 0.407 |
EIF4G | UPF1 | A0A371FK95 | A0A371FTA7 | Eukaryotic translation initiation factor 4G. | Regulator of nonsense transcripts 1-like protein. | 0.821 |
EIF4G | nxt3 | A0A371FK95 | A0A371ES29 | Eukaryotic translation initiation factor 4G. | Nxt3. | 0.430 |
EIF4G-2 | UPF1 | A0A371G4H5 | A0A371FTA7 | Eukaryotic translation initiation factor 4G. | Regulator of nonsense transcripts 1-like protein. | 0.821 |
EIF4G-2 | nxt3 | A0A371G4H5 | A0A371ES29 | Eukaryotic translation initiation factor 4G. | Nxt3. | 0.425 |
NRPE1 | nxt3 | A0A371II52 | A0A371ES29 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Nxt3. | 0.428 |
UBP24 | UPF1 | A0A371EHQ6 | A0A371FTA7 | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | Regulator of nonsense transcripts 1-like protein. | 0.722 |
UBP24 | nxt3 | A0A371EHQ6 | A0A371ES29 | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | Nxt3. | 0.876 |
UPF1 | ABCE2 | A0A371FTA7 | A0A371HEA5 | Regulator of nonsense transcripts 1-like protein. | ABC transporter E family member 2. | 0.613 |
UPF1 | EIF4G | A0A371FTA7 | A0A371FK95 | Regulator of nonsense transcripts 1-like protein. | Eukaryotic translation initiation factor 4G. | 0.821 |
UPF1 | EIF4G-2 | A0A371FTA7 | A0A371G4H5 | Regulator of nonsense transcripts 1-like protein. | Eukaryotic translation initiation factor 4G. | 0.821 |
UPF1 | UBP24 | A0A371FTA7 | A0A371EHQ6 | Regulator of nonsense transcripts 1-like protein. | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | 0.722 |
UPF1 | nxt3 | A0A371FTA7 | A0A371ES29 | Regulator of nonsense transcripts 1-like protein. | Nxt3. | 0.593 |
nxt3 | ABCE2 | A0A371ES29 | A0A371HEA5 | Nxt3. | ABC transporter E family member 2. | 0.407 |
nxt3 | EIF4G | A0A371ES29 | A0A371FK95 | Nxt3. | Eukaryotic translation initiation factor 4G. | 0.430 |
nxt3 | EIF4G-2 | A0A371ES29 | A0A371G4H5 | Nxt3. | Eukaryotic translation initiation factor 4G. | 0.425 |
nxt3 | NRPE1 | A0A371ES29 | A0A371II52 | Nxt3. | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.428 |
nxt3 | UBP24 | A0A371ES29 | A0A371EHQ6 | Nxt3. | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | 0.876 |
nxt3 | UPF1 | A0A371ES29 | A0A371FTA7 | Nxt3. | Regulator of nonsense transcripts 1-like protein. | 0.593 |