Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARF5 | CR513_10840 | A0A371EHF2 | A0A371HRC3 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | Early nodulin-like protein 1. | 0.447 |
ARF5 | FLA4 | A0A371EHF2 | A0A371GGK1 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | Fasciclin-like arabinogalactan protein 4. | 0.479 |
ARF5 | NRG2-11 | A0A371EHF2 | A0A371GUU5 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | Nitrate regulatory gene2 protein. | 0.515 |
ARF5 | OFP13 | A0A371EHF2 | A0A371F1X9 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | Transcription repressor OFP13. | 0.478 |
BHLH162 | CR513_34774 | A0A371DZU0 | A0A371G0W3 | Transcription factor bHLH162. | Uncharacterized protein. | 0.483 |
BHLH162 | CR513_39343 | A0A371DZU0 | A0A371FPY6 | Transcription factor bHLH162. | Uncharacterized protein. | 0.413 |
BHLH162 | CR513_48928 | A0A371DZU0 | A0A371F063 | Transcription factor bHLH162. | Uncharacterized protein. | 0.525 |
BHLH162 | FLA4 | A0A371DZU0 | A0A371GGK1 | Transcription factor bHLH162. | Fasciclin-like arabinogalactan protein 4. | 0.437 |
BHLH162 | OFP13 | A0A371DZU0 | A0A371F1X9 | Transcription factor bHLH162. | Transcription repressor OFP13. | 0.494 |
BHLH162-9 | CR513_34774 | A0A371HJG8 | A0A371G0W3 | Transcription factor bHLH162. | Uncharacterized protein. | 0.495 |
BHLH162-9 | CR513_39343 | A0A371HJG8 | A0A371FPY6 | Transcription factor bHLH162. | Uncharacterized protein. | 0.410 |
BHLH162-9 | CR513_48928 | A0A371HJG8 | A0A371F063 | Transcription factor bHLH162. | Uncharacterized protein. | 0.519 |
BHLH162-9 | FLA4 | A0A371HJG8 | A0A371GGK1 | Transcription factor bHLH162. | Fasciclin-like arabinogalactan protein 4. | 0.457 |
BHLH162-9 | OFP13 | A0A371HJG8 | A0A371F1X9 | Transcription factor bHLH162. | Transcription repressor OFP13. | 0.498 |
CR513_10840 | ARF5 | A0A371HRC3 | A0A371EHF2 | Early nodulin-like protein 1. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.447 |
CR513_10840 | FLA4 | A0A371HRC3 | A0A371GGK1 | Early nodulin-like protein 1. | Fasciclin-like arabinogalactan protein 4. | 0.404 |
CR513_10840 | NRG2-11 | A0A371HRC3 | A0A371GUU5 | Early nodulin-like protein 1. | Nitrate regulatory gene2 protein. | 0.405 |
CR513_10840 | OFP13 | A0A371HRC3 | A0A371F1X9 | Early nodulin-like protein 1. | Transcription repressor OFP13. | 0.495 |
CR513_34774 | BHLH162 | A0A371G0W3 | A0A371DZU0 | Uncharacterized protein. | Transcription factor bHLH162. | 0.483 |
CR513_34774 | BHLH162-9 | A0A371G0W3 | A0A371HJG8 | Uncharacterized protein. | Transcription factor bHLH162. | 0.495 |
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