Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB70341.1Hypothetical protein. (49 aa)    
Predicted Functional Partners:
KXB70342.1
Hemerythrin HHE cation binding domain protein; KEGG: lsi:HN6_01281 1.1e-08 Oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
       0.572
KXB70340.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: pfe:PSF113_4167 1.1e-17 exbB; protein ExbB/TolQ K03561; Psort location: CytoplasmicMembrane, score: 10.00.
       0.531
KXB70339.1
Transport energizing protein, ExbD/TolR family; KEGG: pfe:PSF113_4166 1.3e-07 exbD; protein ExbD/TolR K03559.
       0.477
KXB70338.1
TonB-dependent receptor; KEGG: ccv:CCV52592_1977 2.0e-11 sulfate/thiosulfate import ATP-binding protein CysA; Psort location: OuterMembrane, score: 10.00.
       0.430
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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