STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB70237.1comF family protein; KEGG: pva:Pvag_2959 7.2e-10 yhgH; amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.96. (233 aa)    
Predicted Functional Partners:
KXB70235.1
TIGR00252 family protein; KEGG: vfi:VF_2212 1.3e-16 yraN; hypothetical protein K07460; Belongs to the UPF0102 family.
 
    0.902
KXB69050.1
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.3e-41 protein smf K04096; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.838
KXB60207.1
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 2.5e-14 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.818
KXB70236.1
Hypothetical protein.
       0.786
KXB69229.1
Mg chelatase-like protein; KEGG: ccm:Ccan_16640 3.0e-113 competence protein comM K07391; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.785
KXB70238.1
Alpha amylase, catalytic domain protein; KEGG: rmg:Rhom172_0268 9.8e-36 Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
       0.773
RadC
KEGG: apb:SAR116_0666 8.5e-29 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0758 family.
 
    0.634
KXB68666.1
KEGG: lba:Lebu_2137 1.2e-182 N-acetylglucosamine-6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase; Psort location: Cytoplasmic, score: 9.97.
  
    0.575
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.567
tdk
Thymidine kinase; KEGG: lba:Lebu_1391 1.4e-179 thymidine kinase; K00857 thymidine kinase; Psort location: Cytoplasmic, score: 9.97.
       0.565
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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